Transporter Protein
NP3588A


    Transport Function
Transporter Name: NP3588A
Transporter Type: Secondary Transporter
Transporter Family: BCCT (TC#: 2.A.15)
The Betaine/Carnitine/Choline Transporter (BCCT) Family
Transporter Subfamily: 
Substrate/Function: glycine betaine/carnitine/choline
TC#: 
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    Genome Locus
PID:   76802432     Blast
Source:   Natronomonas pharaonis DSM2160
Chromosome:   CHR
Location:   1734317..1735900
Gene:   tp58
Length:  527
Strand:  -
Code:   -
COG:   -
Product:  compatible solute transporter (probable substrate choline/ glycine betaine)
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    Transmembrane Segment
TMSs: 
TMHMM Server 
Total:     13
TMS 1:  21-40
TMS 2:  60-82
TMS 3:  95-117
TMS 4:  152-174
TMS 5:  207-229
TMS 6:  244-266
TMS 7:  273-295
TMS 8:  324-346
TMS 9:  359-378
TMS 10:  393-415
TMS 11:  422-444
TMS 12:  459-481
TMS 13:  486-508
Topology:   >NP3588A
MSQRPSSVSESLRSFINELDPVPFLVGAVISVGFVIYTAYDVAAVQAGIDWAFGTLGERLAWLYLAGMLA
LIVLAAYLMVSSYGSVTLGTGPPEYSYPAYVAMFFSAGLSAGIVFFGPAEALGHYQTPPPLFEGSVGPAS
EGAIVPAVAYTIFHYGLSAWGGYLAIGLPVAYFAYKYDAPFRVSTALYPVLGTERLDGVVARAVDTLAVV
ATIGGIATGLGFIATQLLTGITFETGRQFSDAETILAITGITVFFTLSLIAGVSRGIRRVSQFNIGLMVL
LLLVALVAGPTLALLNTGVAALGSYGANFFQMSLFLGADGGAEWAAAWTVFYWSWWIAWAPFVGLFLARI
SRGRTIRTVVGTAFVTMTVTSAIWFTVVGGSSVWLHHLGVVDLLGPVGEFGNGIAGFVLFGSFTGGAVWQ
LLFFVLVTTFFVTSADSSTLALGMLTTGGERAPSKANRAFWGVLQGVIASVLVVVGGATALRSSVIVTGA
PFAVVCLVALAGFVYWLWADTPEPSTQGASGASVSDD
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    Sequence
Protein Sequence: >NP3588A 76802432 compatible solute transporter (probable substrate choline/ glycine betaine) [Natronomonas pharaonis DSM2160]
MSQRPSSVSESLRSFINELDPVPFLVGAVISVGFVIYTAYDVAAVQAGIDWAFGTLGERLAWLYLAGMLA
LIVLAAYLMVSSYGSVTLGTGPPEYSYPAYVAMFFSAGLSAGIVFFGPAEALGHYQTPPPLFEGSVGPAS
EGAIVPAVAYTIFHYGLSAWGGYLAIGLPVAYFAYKYDAPFRVSTALYPVLGTERLDGVVARAVDTLAVV
ATIGGIATGLGFIATQLLTGITFETGRQFSDAETILAITGITVFFTLSLIAGVSRGIRRVSQFNIGLMVL
LLLVALVAGPTLALLNTGVAALGSYGANFFQMSLFLGADGGAEWAAAWTVFYWSWWIAWAPFVGLFLARI
SRGRTIRTVVGTAFVTMTVTSAIWFTVVGGSSVWLHHLGVVDLLGPVGEFGNGIAGFVLFGSFTGGAVWQ
LLFFVLVTTFFVTSADSSTLALGMLTTGGERAPSKANRAFWGVLQGVIASVLVVVGGATALRSSVIVTGA
PFAVVCLVALAGFVYWLWADTPEPSTQGASGASVSDD
DNA Sequence: >NP3588A 76802432 compatible solute transporter (probable substrate choline/ glycine betaine) [Natronomonas pharaonis DSM2160]
ATGAGTCAGCGACCATCCTCGGTCAGTGAGTCGTTACGCTCGTTTATCAACGAACTCGACCCGGTTCCGT
TCTTGGTCGGCGCGGTCATCTCGGTCGGCTTCGTCATCTACACTGCCTACGATGTCGCCGCGGTGCAGGC
GGGCATCGACTGGGCGTTCGGCACACTCGGTGAGCGGCTCGCATGGTTGTATTTGGCTGGTATGCTCGCA
CTAATCGTGCTTGCGGCCTATCTCATGGTCAGTTCGTACGGCAGCGTGACGCTCGGGACGGGGCCGCCGG
AGTACAGCTACCCCGCGTACGTGGCGATGTTCTTTTCTGCCGGGCTCTCGGCCGGTATCGTCTTTTTCGG
CCCCGCAGAGGCGCTGGGCCACTACCAGACCCCGCCGCCGCTGTTCGAGGGGTCGGTTGGGCCGGCATCG
GAGGGCGCTATCGTTCCGGCAGTCGCATACACGATTTTCCACTACGGGCTGAGTGCTTGGGGCGGCTATC
TCGCCATCGGGCTGCCCGTGGCGTACTTCGCGTACAAGTACGACGCACCGTTTCGGGTTTCGACGGCTCT
GTATCCGGTACTCGGCACGGAGCGGCTTGACGGCGTCGTCGCCCGGGCGGTTGACACACTCGCTGTCGTC
GCGACAATCGGCGGTATTGCGACCGGCCTCGGATTCATCGCGACCCAGCTGTTGACCGGCATCACCTTCG
AGACCGGGCGGCAGTTCAGCGACGCTGAGACTATCCTCGCCATTACTGGCATTACTGTCTTCTTTACGCT
CTCGTTGATCGCCGGTGTTTCGCGTGGCATCCGCCGTGTTTCGCAGTTCAACATCGGGCTGATGGTGCTA
CTGCTCTTGGTCGCGCTCGTTGCGGGGCCGACCTTGGCGCTGCTGAATACGGGCGTTGCGGCGCTTGGGT
CCTACGGGGCGAACTTCTTCCAGATGAGCCTCTTTCTCGGTGCGGATGGCGGCGCTGAGTGGGCGGCCGC
TTGGACGGTGTTCTACTGGTCGTGGTGGATCGCGTGGGCACCTTTCGTCGGGCTCTTTTTGGCGCGTATC
TCCCGTGGACGGACGATTAGAACAGTGGTCGGCACAGCCTTCGTTACGATGACGGTCACGTCAGCCATCT
GGTTTACGGTGGTGGGCGGAAGTTCCGTTTGGCTGCATCATCTCGGCGTTGTCGACCTCCTCGGTCCGGT
TGGAGAGTTCGGCAATGGAATCGCTGGGTTCGTGCTGTTCGGGTCGTTTACCGGCGGCGCGGTCTGGCAA
CTGTTGTTTTTCGTTCTCGTCACGACGTTCTTTGTCACGTCCGCCGACTCGTCGACGCTCGCCCTCGGAA
TGTTGACGACCGGCGGAGAGCGAGCGCCATCGAAGGCGAACCGAGCGTTCTGGGGGGTGCTTCAGGGAGT
CATCGCCTCCGTGCTCGTCGTCGTCGGGGGTGCGACCGCGTTGCGGTCGTCGGTCATCGTCACAGGCGCT
CCGTTTGCGGTCGTCTGTCTGGTCGCACTCGCCGGGTTCGTCTACTGGCTTTGGGCTGATACCCCGGAGC
CCTCGACACAGGGTGCTTCGGGAGCCAGCGTCTCGGACGACTGA
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    Publications
Publications on this gene:
1.  Genome Res 2005 Oct ; 10(15):1336-43.
Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis.

Falb M ,Pfeiffer F ,Palm P ,Rodewald K ,Hickmann V ,Tittor J ,Oesterhelt D ,

Max-Planck-Institute of Biochemistry, Department of Membrane Biochemistry, D-82152 Martinsried, Germany.

Natronomonas pharaonis is an extremely haloalkaliphilic archaeon that was isolated from salt-saturated lakes of pH 11. We sequenced its 2.6-Mb GC-rich chromosome and two plasmids (131 and 23 kb). Genome analysis suggests that it is adapted to cope with severe ammonia and heavy metal deficiencies that arise at high pH values. A high degree of nutritional self-sufficiency was predicted and confirmed by growth in a minimal medium containing leucine but no other amino acids or vitamins. Genes for a complex III analog of the respiratory chain could not be identified in the N. pharaonis genome, but respiration and oxidative phosphorylation were experimentally proven. These studies identified protons as coupling ion between respiratory chain and ATP synthase, in contrast to other alkaliphiles using sodium instead. Secretome analysis predicts many extracellular proteins with alkaline-resistant lipid anchors, which are predominantly exported through the twin-arginine pathway. In addition, a variety of glycosylated cell surface proteins probably form a protective complex cell envelope. N. pharaonis is fully equipped with archaeal signal transduction and motility genes. Several receptors/transducers signaling to the flagellar motor display novel domain architectures. Clusters of signal transduction genes are rearranged in haloarchaeal genomes, whereas those involved in information processing or energy metabolism show a highly conserved gene order.


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    External Links

   TIGR CMRTHE SEEDThe SEED  
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    NBCI Gene Page
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